Stem-loop gga-mir-214

Accession

MI0008208

Description

Gallus gallus gga-mir-214 precursor miRNA

Gene family

MIPF0000062; mir-214

Literature search

4 open access papers mention gga-mir-214
(11 sentences)

Sequence

1107 reads, 28 reads per million, 5 experiments

ggacuggcuggacggaguugucaugugucugccugucuacacuugcugugcagaacauccucucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure

ggacu      acgga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     u
----u      -----           u          CAC            cacuc 

Annotation confidence High

Genome context

chr8: 4658313-4658422 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-214

Mature gga-miR-214

• Accession: MIMAT0007751
• Description: Gallus gallus gga-miR-214 mature miRNA
• Sequence: 71 - ACAGCAGGCACAGACAGGCAG - 91
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40