Accession
MI0008213
Description
Sus scrofa
ssc-mir-16-1 precursor miRNA
Gene family
MIPF0000006;
mir-15
Literature search
22 open access papers mention ssc-mir-16-1
(47 sentences)
(47 sentences)
Sequence
625
reads,
291
reads per million, 11 experiments
uccgcucUAGCAGCACGUAAAUAUUGGCGuaguaaaauaaauauuaaacaccaauauuauugugcugcuuuagcgug
..((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..))))..
..((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..))))..
Structure
uc cU UA C -- aa cgcu AGCAGCACG AAUAUUGG Gu agua a |||| ||||||||| |||||||| || |||| u gcga ucgucgugu uuauaacc ca uuau a gu uu ua a aa aa
Annotation confidence
Not enough data
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Genome context
chr13: 108388290-108388366 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-16-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-16
| Accession | MIMAT0007754 |
| Description | Sus scrofa ssc-miR-16 mature miRNA |
| Sequence | 8 - UAGCAGCACGUAAAUAUUGGCG - 29 |
| Evidence |
experimental
cloned [1,3], Illumina [2,4-5] |
References
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