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miRBase |
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Stem-loop sequence ssc-mir-17 |
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Accession | MI0008214 (change log) | |||||||||||||
Description | Sus scrofa miR-17 stem-loop | |||||||||||||
Gene family | MIPF0000001; mir-17 | |||||||||||||
Literature search |
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30 open access papers mention ssc-mir-17 | |||||||||||||
Stem-loop |
ga -ca a g g - aua 5' auaaugu aagugcuu ca ugcag uag ug a ||||||| |||||||| || ||||| ||| || 3' uauuacg uucacgga gu acguc auc ac u gg aug a g - u gug |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence ssc-miR-17-5p |
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Accession | MIMAT0007755 |
Previous IDs | ssc-miR-17 |
Sequence |
10 - caaagugcuuacagugcagguag - 32 |
Deep sequencing | 4969 reads, 15 experiments |
Evidence | experimental; cloned [1,3], Illumina [2,4-5] |
Mature sequence ssc-miR-17-3p |
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Accession | MIMAT0015268 |
Sequence |
48 - acugcagugaaggcacuuguag - 69 |
Deep sequencing | 139 reads, 14 experiments |
Evidence | experimental; Illumina [2,4-5] |
References |
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1 |
PMID:18548309
"Identification and characterization of new microRNAs from pig"
Mamm Genome. 19:570-580(2008).
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2 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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3 |
PMID:20180025
"Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
Mol Biol Rep. 37:3567-3574(2010).
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4 |
PMID:21312241
"MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing"
J Cell Biochem. 112:1318-1328(2011).
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5 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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