miRBase entry: osa-MIR1850

Stem-loop osa-MIR1850


Accession
MI0008227
Description
Oryza sativa osa-MIR1850 precursor miRNA

Literature search
7 open access papers mention osa-MIR1850
(15 sentences)

Sequence

540 reads, 379 reads per million, 2 experiments
augugauggagaugcgaUGGAAAGUUGGGAGAUUGGGGgaagUUGUGUGUGAACUAAACGUGGauuggggccCUGUUUAGUUCACAUCAAUCUUccuccaaauucccaacuuuucaucacaucacaaucacau
(((((((...((((.((((((((((((((((.(((((((((((((.((((((((((((((.((........))))))))))))))))))).)))))))))).)))))))))))))))).))))...)))))))

Structure
       gga    c                A          -   U              U  auu 
augugau   gaug gaUGGAAAGUUGGGAG UUGGGGgaag UUG GUGUGAACUAAACG GG   g
|||||||   |||| |||||||||||||||| |||||||||| ||| |||||||||||||| ||    
uacacua   cuac cuacuuuucaacccuu aaccuccUUC AAC UACACUUGAUUUGU Cc   g
       aca    a                a          U   -              -  cgg 


Annotation confidence Not enough data
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Genome context
Chr5: 26275207-26275339 [-]

Database links

Mature osa-miR1850.1

Accession MIMAT0007770
Description Oryza sativa osa-miR1850.1 mature miRNA
Sequence 18 - UGGAAAGUUGGGAGAUUGGGG - 38
Evidence experimental
454 [1], Illumina [3]
Database links

Mature osa-miR1850.2

Accession MIMAT0009210
Description Oryza sativa osa-miR1850.2 mature miRNA
Sequence 43 - UUGUGUGUGAACUAAACGUGG - 63
Evidence experimental
Illumina [2-3]

Mature osa-miR1850.3

Accession MIMAT0009211
Description Oryza sativa osa-miR1850.3 mature miRNA
Sequence 73 - CUGUUUAGUUCACAUCAAUCUU - 94
Evidence experimental
Illumina [2-3]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465

  3. PubMed ID: 19103661
    Characterization and expression profiles of miRNAs in rice seeds
    "Xue LJ, Zhang JJ, Xue HW"
    "Nucleic Acids Res (2009) 37:916-930