miRBase entry: osa-MIR1856

Stem-loop osa-MIR1856


Accession
MI0008233
Description
Oryza sativa osa-MIR1856 precursor miRNA

Literature search
1 open access papers mention osa-MIR1856
(1 sentences)

Sequence

4 reads, 2 reads per million, 2 experiments
agagcacugcUAUGCGUAAGACGGAUUCGUAcuaccugcguccgaccauaucaugugcaccgaucaccgucuuuagcuucucuccaccaaugcaagcagcauucggaugcaugucguacgaauccgucggacgcauagcuauuuucuuu
((((....(((((((((..(((((((((((((.((.(((((((((.........((((...(((....)))....(((((...........).)))).))))))))))))).)).)))))))))))))..)))))))))....))))..

Structure
--    cacu         AA             u  c         ccauaucau    accgaucaccgucuuua    - ucuc 
  agag    gcUAUGCGU  GACGGAUUCGUAc ac ugcguccga         gugc                 gcuu c    c
  ||||    |||||||||  ||||||||||||| || |||||||||         ||||                 |||| |    a
  ucuu    cgauacgca  cugccuaagcaug ug acguaggcu         uacg                 cgaa g    c
uu    uuau         gg             c  u         ---------    ----------------a    c uaac 


Annotation confidence Not enough data
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Genome context
Chr11: 10376148-10376296 [-]

Database links

Mature osa-miR1856

Accession MIMAT0007778
Description Oryza sativa osa-miR1856 mature miRNA
Sequence 11 - UAUGCGUAAGACGGAUUCGUA - 31
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465