miRBase entry: osa-MIR1858a

Stem-loop osa-MIR1858a


Accession
MI0008240
Description
Oryza sativa osa-MIR1858a precursor miRNA
Gene family
MIPF0000650; MIR1858

Literature search
2 open access papers mention osa-MIR1858a
(2 sentences)

Sequence

ucccgucaucgcugccggcaaagggagggggggugccgcaacaagGAGAGGAGGACGGAGUGGGGCgaguggagcgucaaaggggaugucaucgccgccgaaucugcucgugggacauccccuucgaugcuccacucgccccaauccguccuccucuccuuguugcggcaccccccuucgcuggcagcgacgacggccuc
..(((((.(((((((((((.....(((((((((((((((((((((((((((((((((((.((((((((((((((((((.(((((((((((....((((.((......))))))))))))))))).)))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))).)))))....

Structure
--uc     a           aaagg                                   G                  a           aucg    c  au 
    ccguc ucgcugccggc     gagggggggugccgcaacaagGAGAGGAGGACGGA UGGGGCgaguggagcguc aaggggauguc    ccgc ga  c
    ||||| |||||||||||     ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    |||| ||   
    ggcag agcgacggucg     cuuccccccacggcguuguuccucuccuccugccu accccgcucaccucguag uuccccuacag    ggug cu  u
cucc     c           -----                                   a                  c           ----    -  cg 


Annotation confidence Not enough data
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Genome context
Chr9: 13536611-13536810 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from osa-MIR1858a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1858a

Accession MIMAT0007786
Description Oryza sativa osa-miR1858a mature miRNA
Sequence 46 - GAGAGGAGGACGGAGUGGGGC - 66
Evidence experimental
454 [1]

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465