Stem-loop osa-MIR1846a

Accession

MI0008242

Description

Oryza sativa osa-MIR1846a precursor miRNA

Gene family

MIPF0000577; MIR1846

Literature search

6 open access papers mention osa-MIR1846a
(7 sentences)

Sequence

3 reads, 1 reads per million, 2 experiments

ccgcucccuaccaaugagccgccggaucucccAGUGAGGAGGCCGGGGCCGCUggauccggUGACCCCGUUCUCCUCGCCGGcggauccggcgcuccagagaaaggaacgag
.((.(((........((((.(((((((((.((.(((((((((.(((((.(((((....))))).))))).))))))))).)).)))))))))))))........))).))..

Structure

-c  c   cuaccaau    c         c  A         C     C     g 
  cg ucc        gagc gccggaucu cc GUGAGGAGG CGGGG CGCUg a
  || |||        |||| ||||||||| || ||||||||| ||||| |||||  
  gc agg        cucg cggccuagg GG CGCUCCUCU GCCCC GUggc u
ga  a   aaagagac    -         c  C         U     A     c 

Annotation confidence Not enough data

Genome context

Chr10: 529274-529385 [+]

Mature osa-miR1846a-5p

• Accession: MIMAT0007788
• Description: Oryza sativa osa-miR1846a-5p mature miRNA
• Sequence: 33 - AGUGAGGAGGCCGGGGCCGCU - 53
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1846a-3p

• Accession: MIMAT0007789
• Description: Oryza sativa osa-miR1846a-3p mature miRNA
• Sequence: 62 - UGACCCCGUUCUCCUCGCCGG - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


2. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930