Stem-loop osa-MIR1861a

Accession

MI0008247

Description

Oryza sativa osa-MIR1861a precursor miRNA

Literature search

8 open access papers mention osa-MIR1861a
(49 sentences)

Sequence

98287 reads, 532.0 reads per million, 136 experiments

uuguguugcauauucuuaggccUGAUCUUGAGGCAGAAACUGAGuaguuggugaacucgcucuauguuguucguucacucgcgacaCGGUUCCUGUCCCAAGAUCGAGucuaugaauauacaaauguga
.....(((.((((((.(((((.((((((((.(((((.(((((.((.((.(((((((..((........))..))))))).)).)).))))).))))).)))))))).))))).)))))).)))......

Structure

-uugug   c      u     c        A     A     A  a  u       uc  ucu 
      uug auauuc uaggc UGAUCUUG GGCAG AACUG Gu gu ggugaac  gc   a
      ||| |||||| ||||| |||||||| ||||| ||||| || || |||||||  ||    
      aac uauaag aucuG GCUAGAAC CUGUC UUGGC ca cg ucacuug  ug   u
agugua   a      u     A        C     C     a  g  c       cu  uug 

Annotation confidence High

Genome context

1: 15049772-15049900 [+]

Mature osa-miR1861a-5p

• Accession: MIMAT0007796
• Description: Oryza sativa osa-miR1861a-5p mature miRNA
• Sequence: 23 - UGAUCUUGAGGCAGAAACUGAG - 44
• Evidence: experimental ; 454 [1]

Mature osa-miR1861a-3p

• Accession: MIMAT0056052
• Description: Oryza sativa osa-miR1861a-3p mature miRNA
• Sequence: 87 - CGGUUCCUGUCCCAAGAUCGAG - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465