Stem-loop sequence osa-MIR1861b

Accession

MI0008248 (change log)

Description

Oryza sativa miR1861b stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

9 open access papers mention osa-MIR1861b
(53 sentences)

Stem-loop

   u  c      u     c        a                 uc      uc  ucu 
5'  ug auauuc uaggc cgaucuug ggcaggaacugaguagu  gugaac  gc   a
    || |||||| ||||| |||||||| |||||||||||||||||  ||||||  ||    
3'  ac uauaag gucug gcuagaac cuguccuuggcuuauca  cacuug  ug   u
   a  a      u     a        c                 cc      cu  uug 

Deep sequencing

190 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr2: 20715962-20716079 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1861b

• osa-MIR1861b: Chr2: 20715962-20716079 [+]
• osa-MIR1861c: Chr2: 20716174-20716280 [+]

Database links

• miRBase Tracker:MI0008248

Mature sequence osa-miR1861b

• Accession: MIMAT0007797
• Sequence: 18 - cgaucuugaggcaggaacugag - 39
• Deep sequencing: 186 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00001FBCD0_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).