Stem-loop osa-MIR1861b

Accession

MI0008248

Description

Oryza sativa osa-MIR1861b precursor miRNA

Gene family

MIPF0000567; MIR1861

Literature search

9 open access papers mention osa-MIR1861b
(53 sentences)

Sequence

101 reads, 73 reads per million, 2 experiments

uugcauauucuuaggccCGAUCUUGAGGCAGGAACUGAGuaguucgugaacucgcucuauguuguucguucacccacuauucgguuccugucccaagaucgagucugugaauauacaa
.((.((((((.(((((.((((((((.(((((((((((((((((..((((((..((........))..))))))..))))))))))))))))).)))))))).))))).)))))).)).

Structure

u  c      u     c        A                 uc      uc  ucu 
 ug auauuc uaggc CGAUCUUG GGCAGGAACUGAGuagu  gugaac  gc   a
 || |||||| ||||| |||||||| |||||||||||||||||  ||||||  ||    
 ac uauaag gucug gcuagaac cuguccuuggcuuauca  cacuug  ug   u
a  a      u     a        c                 cc      cu  uug 

Annotation confidence Not enough data

Genome context

Chr2: 20715962-20716079 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861b

Mature osa-miR1861b

• Accession: MIMAT0007797
• Description: Oryza sativa osa-miR1861b mature miRNA
• Sequence: 18 - CGAUCUUGAGGCAGGAACUGAG - 39
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465