Stem-loop osa-MIR1861c

Accession

MI0008249

Description

Oryza sativa osa-MIR1861c precursor miRNA

Literature search

8 open access papers mention osa-MIR1861c
(46 sentences)

Sequence

14797 reads, 71.0 reads per million, 119 experiments

cgguguugcauauucuuagaccCGAUCUUGUAGCAAGAACUGAGuaguucguuaacucgcuacgcGGUUCUUGUCACAAGACCGAGCcugugaauaugcaaaggugg
((.(.((((((((((.(((.(.((.((((((.((((((((((.(((((..........))))).)))))))))).)))))).)).).))).)))))))))).).)).

Structure

-  g g          u   a c  A      A          A     ucgu 
 cg u uugcauauuc uag c CG UCUUGU GCAAGAACUG Guagu    u
 || | |||||||||| ||| | || |||||| |||||||||| |||||     
 gu g aacguauaag guc G GC AGAACA UGUUCUUGGc caucg    a
g  g a          u   C A  C      C          g     cuca 

Annotation confidence High

Genome context

2: 20716174-20716280 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861c

Mature osa-miR1861c-5p

• Accession: MIMAT0007798
• Description: Oryza sativa osa-miR1861c-5p mature miRNA
• Sequence: 23 - CGAUCUUGUAGCAAGAACUGAG - 44
• Evidence: experimental ; 454 [1]

Mature osa-miR1861c-3p

• Accession: MIMAT0056054
• Description: Oryza sativa osa-miR1861c-3p mature miRNA
• Sequence: 66 - GGUUCUUGUCACAAGACCGAGC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465