Stem-loop osa-MIR1861e

Accession

MI0008251

Description

Oryza sativa osa-MIR1861e precursor miRNA

Literature search

9 open access papers mention osa-MIR1861e
(48 sentences)

Sequence

314547 reads, 1226.0 reads per million, 138 experiments

gcauauucuuaggccCGGUCUUGUGGCAAGAACUGAGuaguucguuaacucgcuacgcGGUUCUUGUCACAAGACCGAGucugugaauaugc
((((((((.(((((.((((((((((((((((((((.(((((..........))))).)))))))))))))))))))).))))).))))))))

Structure

        u     c                    A     ucgu 
gcauauuc uaggc CGGUCUUGUGGCAAGAACUG Guagu    u
|||||||| ||||| |||||||||||||||||||| |||||     
cguauaag gucuG GCCAGAACACUGUUCUUGGc caucg    a
        u     A                    g     cuca 

Annotation confidence High

Genome context

4: 6536556-6536647 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861e

Mature osa-miR1861e-5p

• Accession: MIMAT0007800
• Description: Oryza sativa osa-miR1861e-5p mature miRNA
• Sequence: 16 - CGGUCUUGUGGCAAGAACUGAG - 37
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1861e-3p

• Accession: MIMAT0056056
• Description: Oryza sativa osa-miR1861e-3p mature miRNA
• Sequence: 59 - GGUUCUUGUCACAAGACCGAG - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207