Stem-loop sequence osa-MIR1861h

Accession

MI0008254 (change log)

Description

Oryza sativa miR1861h stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

10 open access papers mention osa-MIR1861h
(51 sentences)

Stem-loop

   u  u     c        a           a  a  u       uc  ucu 
5'  uc uaggc cggucuug ggcaggaacug gu gu ggugaac  gc   a
    || ||||| |||||||| ||||||||||| || || |||||||  ||    
3'  ag gucug gucagaac cuguccuuggc ca cg ucacuug  ug   u
   a  u     a        c           a  g  c       cu  uug 

Deep sequencing

250 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr6: 27238190-27238293 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008254

Mature sequence osa-miR1861h

• Accession: MIMAT0007803
• Sequence: 11 - cggucuugaggcaggaacugag - 32
• Deep sequencing: 242 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000048AE79_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).