Stem-loop sequence osa-MIR1861l

Accession MI0008258
Description Oryza sativa miR1861l stem-loop
Gene family MIPF0000567; MIR1861
Stem-loop 
   ug  -gc      u              a           a  a  u      cuc  ucu 
ucg  uu   auauuc uaggcccgaucuug ggcaggaacug gu gu ggugaa   gc   a
|||  ||   |||||| |||||||||||||| ||||||||||| || || ||||||   ||    
agu  aa   uauaag gucugggcuagaac cuguccuuggc ca cg ucacuu   ug   u
   gu  aca      u              c           a  g  c      acu  uug
Get sequence
Deep sequencing
697 reads, 4 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr9: 13532426-13532554 [+]
intergenic
Clustered miRNAs
< 10kb from osa-MIR1861l
osa-MIR1861l Chr9: 13532426-13532554 [+]
osa-MIR1861m Chr9: 13532649-13532744 [+]
osa-MIR1858a Chr9: 13536611-13536810 [+]

Mature sequence osa-miR1861l

Accession MIMAT0007807
Sequence

23 -  

cgaucuugaggcaggaacugag

 - 44

Get sequence
Deep sequencing 655 reads, 4 experiments
Evidence experimental; 454 [1], Solexa [2]

References

1
PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).
2
PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage" Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Plant Cell. 23:4185-4207(2011).