Stem-loop sequence osa-MIR1862c

Accession

MI0008263 (change log)

Description

Oryza sativa miR1862c stem-loop

Gene family

MIPF0000580; MIR1862

Literature search

11 open access papers mention osa-MIR1862c
(14 sentences)

Stem-loop

   --    c                gu     c        uauau 
5'   acuc cuccgucccaaaauaa  caauc cguacuag     g
     |||| ||||||||||||||||  ||||| ||||||||     a
3'   ugag gaggcaggguuuuauu  guugg gcaugauc     c
   ga    a                ug     a        cuuca 

Deep sequencing

2428 reads, 1.1e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr10: 16093884-16093972 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008263

Mature sequence osa-miR1862c

• Accession: MIMAT0007812
• Sequence: 56 - acgagguugguuuauuuugggacg - 79
• Deep sequencing: 2310 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00000FD01F_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).