Stem-loop sequence osa-MIR1864

Accession

MI0008265 (change log)

Description

Oryza sativa miR1864 stem-loop

Literature search

2 open access papers mention osa-MIR1864
(2 sentences)

Stem-loop

   -                            cca      aga    a    ug     a      c            ag aggcggguuugaccggugggagggggcuuugaccguucuuugaccgaa 
5'  acuacacauugaccaucgcguuacuacg   uucuug   gacg gaau  aaaag gguggg guggggggaggu  c                                                g
    ||||||||||||||||||||||||||||   ||||||   |||| ||||  ||||| |||||| ||||||||||||  |                                                u
3'  ugauguguaacugguagugcaaugaugu   aaggac   cugu uuug  uuuuc ccaccc caccccccucca  g                                                g
   a                            uac      --g    g    gu     c      a            ga aguacccgguuggguggagggggagggaucccggguuuuggguggagg 

Deep sequencing

84 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr2: 14949073-14949328 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008265

Mature sequence osa-miR1864

• Accession: MIMAT0007814
• Sequence: 227 - uuguaguaacgugauggucaaugu - 250
• Deep sequencing: 63 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00003FDA6C_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).