Stem-loop sequence osa-MIR1869

Accession MI0008272
Description Oryza sativa miR1869 stem-loop
Gene family MIPF0000745; MIR2118
Stem-loop 
--     a         a  a            guauu      a acagg   a      gac    aau 
  aagga caccugaga ca uaggcaugggag     gggaaa c     aac uauugu   cccu   u
  ||||| ||||||||| || ||||||||||||     |||||| |     ||| ||||||   ||||    
  uuucu guggauucu gu auccguacccuu     uccuuu g     uug guaaua   ggga   u
uu     c         c  a            guacc      c --gag   -      -aa    aau
Get sequence
Deep sequencing
49 reads, 2 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr4: 21644852-21644989 [+]
intergenic
Clustered miRNAs
< 10kb from osa-MIR1869
osa-MIR2118a Chr4: 21642923-21643101 [-]
osa-MIR1869 Chr4: 21644852-21644989 [+]
osa-MIR2118b Chr4: 21645285-21645463 [-]
osa-MIR2118e Chr4: 21647428-21647604 [-]
osa-MIR2118d Chr4: 21647689-21647864 [-]
osa-MIR2118c Chr4: 21647968-21648064 [-]
osa-MIR2118g Chr4: 21650301-21650460 [-]
osa-MIR5522 Chr4: 21650324-21650436 [+]
osa-MIR2118f Chr4: 21650514-21650682 [-]
osa-MIR2118i Chr4: 21652388-21652568 [-]
osa-MIR2118h Chr4: 21652652-21652808 [-]
osa-MIR2118j Chr4: 21654594-21654764 [-]

Mature sequence osa-miR1869

Accession MIMAT0007822
Sequence

11 -  

ugagaacaauaggcaugggaggua

 - 34

Get sequence
Deep sequencing 49 reads, 2 experiments
Evidence experimental; 454 [1]

References

1
PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).