Stem-loop osa-MIR1874

Accession

MI0008277

Description

Oryza sativa osa-MIR1874 precursor miRNA

Literature search

8 open access papers mention osa-MIR1874
(39 sentences)

Sequence

2 reads, 3 reads per million, 1 experiments

ccauaaucaucuauuaguacaguggugaagacaUAGGGCUACUACACCAUCCAUAAGgguucgaaucuucgaugugccuagauaggguacaguuggaucccaUAUGGAUGGAGGUGUAACCCGAUGccuuuuacaaauagaugguuauuuu
..(((((((((((((.(((.......((((.(((.(((.(((.((.(((((((((.(((.((.(((......(((((((.....)))))))))).)).))).)))))))))..))))).))).))).))))))).)))))))))))))...

Structure

-cc             a   caguggu    a   A   C   U  -A         A   u  g   cuucga       a 
   auaaucaucuauu gua       gaag caU GGG UAC AC  CCAUCCAUA Ggg uc aau      ugugccu g
   ||||||||||||| |||       |||| ||| ||| ||| ||  ||||||||| ||| || |||      ||||||| a
   uauugguagauaa cau       uuuc GUA CCC AUG UG  GGUAGGUAU ccc ag uug      acauggg u
uuu             a   -------    c   G   A   -  GA         a   u  g   ------       a 

Annotation confidence Low

Genome context

Chr8: 8702798-8702948 [-]

Mature osa-miR1874-5p

• Accession: MIMAT0007827
• Description: Oryza sativa osa-miR1874-5p mature miRNA
• Sequence: 34 - UAGGGCUACUACACCAUCCAUAAG - 57
• Evidence: experimental ; 454 [1], Illumina [3]

Mature osa-miR1874-3p

• Accession: MIMAT0007828
• Description: Oryza sativa osa-miR1874-3p mature miRNA
• Sequence: 103 - UAUGGAUGGAGGUGUAACCCGAUG - 126
• Evidence: experimental ; 454 [1], cloned [2]

References

1. PubMed ID: 19055717
   Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
   Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
   BMC Plant Biol (2008) 8:123


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


3. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930