miRBase entry: osa-MIR1876

Stem-loop osa-MIR1876


Accession
MI0008280
Description
Oryza sativa osa-MIR1876 precursor miRNA

Literature search
7 open access papers mention osa-MIR1876
(13 sentences)

Sequence

235 reads, 169 reads per million, 2 experiments
ggcacauauguugguauucuauuggaaugcaagugggcuggcuuuugaacccauuuaugggcuauucaaguggguaaaccauagguuggugcacuuaaauggccuAUAAGUGGGUUUGUGGGCUGGCCCucuuguauccugauaguuuaguaugauu
...........((.((..(((((((.(((((((.((((((((((.(((((((((((((((((((((.(((((.(..((((...))))..).))))).))))))))))))))))))))).)))))))))).))))))).)))))))..)).)).....

Structure
ggcacauaugu  g  uu       a       u          u                     c     g ua    a 
           ug ua  cuauugg augcaag gggcuggcuu ugaacccauuuaugggcuauu aagug g  aacc  
           || ||  ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||| |  |||| u
           au au  gauaguc uauguuc CCCGGUCGGG GUUUGGGUGAAUAuccgguaa uucac u  uugg  
------uuagu  g  uu       c       u          U                     a     g gg    a 


Annotation confidence Not enough data
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Genome context
Chr10: 4833365-4833521 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR1876
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1876

Accession MIMAT0007831
Description Oryza sativa osa-miR1876 mature miRNA
Sequence 106 - AUAAGUGGGUUUGUGGGCUGGCCC - 129
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465