miRBase entry: osa-MIR1862e

Stem-loop osa-MIR1862e


Accession
MI0008282
Description
Oryza sativa osa-MIR1862e precursor miRNA
Gene family
MIPF0000580; MIR1862

Literature search
12 open access papers mention osa-MIR1862e
(17 sentences)

Sequence

1905 reads, 1340 reads per million, 2 experiments
uauuuccuucaucccaaaaugaaaaaaucuaguacauuauguguuugacauauccuguaCUAGAUUUGUUUAUUUUGGGACGGagggaguauc
((((((((((.((((((((((((.((((((((((((..((((((...))))))..)))))))))))).)))))))))))).))))))))))..

Structure
--          a            a            uu      u 
  uauuuccuuc ucccaaaaugaa aaaucuaguaca  augugu  
  |||||||||| |||||||||||| ||||||||||||  |||||| u
  augagggaGG AGGGUUUUAUUU UUUAGAUCaugu  uauaca  
cu          C            G            cc      g 


Annotation confidence Not enough data
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Genome context
Chr11: 2523232-2523324 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR1862e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1862e

Accession MIMAT0007833
Description Oryza sativa osa-miR1862e mature miRNA
Sequence 60 - CUAGAUUUGUUUAUUUUGGGACGG - 83
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465