Stem-loop osa-MIR812g

Accession

MI0008296

Description

Oryza sativa osa-MIR812g precursor miRNA

Literature search

11 open access papers mention osa-MIR812g
(19 sentences)

Sequence

432 reads, 300 reads per million, 2 experiments

uuccgauguaaucccucuguuccauuuuaagugcagccaugguuuuacgcgcucaacuuuaaucguccgucuuauuuaaaaaaaauuaaaaacauaagucaugaguaaaguauacuauucauauuuuauuaucucauaacaauaaaaauacuaauuauaaaaaaauuuaaauAAGACGGAUGAUUAAAGUUGGACAuggaaacucauaguuguacuuaaaaugggacgaagggaguaucauu
....((((...(((((.((((((((((((((((((((.((((((((.((.(.((((((((((((((((((((((((((((.................((.(((((((((((((.......))))))))....))))).)).((((.........)))).......)))))))))))))))))))))))))))).).))))))).))).)))))))))))))))))))).)))))....))))

Structure

uucc    -uaa     c                    c   -     a  c c                            --------aaaaauuaaaaacauaa  c     ----        ac 
    gaug    ucccu uguuccauuuuaagugcagc aug guuuu cg g ucaacuuuaaucguccgucuuauuuaaa                         gu augag    uaaaguau  u
    ||||    ||||| |||||||||||||||||||| ||| ||||| || | ||||||||||||||||||||||||||||                         || |||||    ||||||||  a
    uuac    aggga gcaggguaaaauucauguug uac caaag gu C GGUUGAAAUUAGUAGGCAGAAuaaauuu                         ca uacuc    auuuuaua  u
----    uaug     a                    a   u     -  A A                            aaaaaaauauuaaucauaaaaauaa  a     uauu        cu 

Annotation confidence Not enough data

Genome context

Chr3: 5230013-5230254 [+]

Mature osa-miR812g

• Accession: MIMAT0007847
• Description: Oryza sativa osa-miR812g mature miRNA
• Sequence: 173 - AAGACGGAUGAUUAAAGUUGGACA - 196
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465