Stem-loop osa-MIR812i

Accession

MI0008298

Description

Oryza sativa osa-MIR812i precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812i
(17 sentences)

Sequence

434 reads, 290 reads per million, 2 experiments

uagaacucccuccauccaaaaauaagcguagccauaaguuuucgucuucaacuuagaucaucugucuuauuugaaacuuuuuuaugauuaguauuuuuuuauuagauuguaaaacaugaauauuacuuuaugcaugacuuauauuauuuuagauuuucuaaaaaaaauaaauAAGACGGAUGAUUAAAGUUGGACAcgaaaacucagggcugcgcuuauuuugggaaugagggaguacggag
....((((((((..(((.(((((((((((((((...(((((((((.((((((((.((((((((((((((((((......((((((((((((((......)))).))))))))))((((.(((......))).))))..........(((((((...)))))))....)))))))))))))))))).)))))))).)))))))))...))))))))))))))).)))..))))))))......

Structure

--uaga        ca   a               aua         c        a                  -----------------------------------------------aaacuu          -    uu 
      acucccuc  ucc aaaauaagcguagcc   aguuuucgu uucaacuu gaucaucugucuuauuug                                                     uuuuaugauu agua  u
      ||||||||  ||| |||||||||||||||   ||||||||| |||||||| ||||||||||||||||||                                                     |||||||||| ||||   
      ugagggag  agg uuuuauucgcgucgg   ucaaaagcA AGGUUGAA UUAGUAGGCAGAAuaaau                                                     aaaauguuag uuau  u
gaggca        ua   g               gac         C        A                  aaaaaaaaucuuuuagauuuuauuauauucaguacguauuucauuauaaguac          a    uu 

Annotation confidence Not enough data

Genome context

Chr7: 22152329-22152570 [+]

Mature osa-miR812i

• Accession: MIMAT0007849
• Description: Oryza sativa osa-miR812i mature miRNA
• Sequence: 173 - AAGACGGAUGAUUAAAGUUGGACA - 196
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465