miRBase entry: ath-MIR1888a

Stem-loop ath-MIR1888a


Accession
MI0008305
Description
Arabidopsis thaliana ath-MIR1888a precursor miRNA
Gene family
MIPF0001333; MIR1888

Literature search
1 open access papers mention ath-MIR1888a
(1 sentences)

Sequence

ccaaauuuuUAAGUUAAGAUUUGUGAAGAAagagcuuuuauauaagaguuuuuaggcuuauauuuaaauuuuuucuucauaaaucuuagcuaagauuugg
(((((((((..(((((((((((((((((((((((.((..(((((((..(....)..)))))))..)).))))))))))))))))))))))))))))))))

Structure
         UA                       c  uu       ag u 
ccaaauuuu  AGUUAAGAUUUGUGAAGAAagag uu  auauaag  u u
|||||||||  ||||||||||||||||||||||| ||  |||||||  |  
gguuuagaa  ucgauucuaaauacuucuuuuuu aa  uauauuc  a u
         --                       a  uu       gg u 


Annotation confidence Not enough data
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Genome context
chr5: 7168870-7168969 [+]

Database links

Mature ath-miR1888a

Accession MIMAT0007855
Description Arabidopsis thaliana ath-miR1888a mature miRNA
Sequence 10 - UAAGUUAAGAUUUGUGAAGAA - 30
Evidence experimental
PARE [1], Illumina [2]

References

  1. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  2. PubMed ID: 18542052
    Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
    "German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ"
    "Nat Biotechnol (2008) 26:941-946