Stem-loop aga-mir-11

Accession

MI0008306

Description

Anopheles gambiae aga-mir-11 precursor miRNA

Literature search

4 open access papers mention aga-mir-11
(8 sentences)

Sequence

181087 reads, 9477.0 reads per million, 24 experiments

gcauccggCAAGAACUUGGAACUGUGAUCUGUgugguuauuagccgcguucgaagcucuucaCAUCACAGUCUGAGUUCUUGCUcgaugg
.((((.((((((((((((((.(((((((.(((((((((...)))))))............)).))))))))))))))))))))).)))).

Structure

g    c              A       C  ------------       a 
 cauc ggCAAGAACUUGGA CUGUGAU UG            Ugugguu  
 |||| |||||||||||||| ||||||| ||            ||||||| u
 guag UCGUUCUUGAGUCU GACACUA ac            gcgccga  
g    c              -       C  uucucgaagcuu       u 

Annotation confidence High

Comments

This mature miRNA was cloned from Anopheles stepheni, and mapped to the A. gambiae genome [1].

Genome context

ref|NC_064601.1|: 12768528-12768617 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aga-mir-11

Mature aga-miR-11-5p

• Accession: MIMAT0053031
• Description: Anopheles gambiae aga-miR-11-5p mature miRNA
• Sequence: 9 - CAAGAACUUGGAACUGUGAUCUGU - 32
• Evidence: not_experimental

Mature aga-miR-11-3p

• Accession: MIMAT0007856
• Description: Anopheles gambiae aga-miR-11-3p mature miRNA
• Sequence: 63 - CAUCACAGUCUGAGUUCUUGCU - 84
• Evidence: not_experimental

References

1. PubMed ID: 18500992
   Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi
   Mead EA, Tu Z
   BMC Genomics (2008) 9:244