Stem-loop sequence hsa-mir-1910

Accession

MI0008331 (change log)

Symbol

HGNC:MIR1910

Description

Homo sapiens miR-1910 stem-loop

Gene family

MIPF0000987; mir-1910

Literature search

2 open access papers mention hsa-mir-1910
(2 sentences)

Stem-loop

   -  u    u  -gcca       gc     g     gugcu 
5'  ug cccu ca     guccugu  cugcc ccuuu     g
    || |||| ||     |||||||  ||||| |||||      
3'  ac ggga gu     uaggacg  gacgg gggag     u
   a  -    -  aacag       aa     a     guucc 

Deep sequencing

223 reads, 5.66 reads per million, 53 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 85741621-85741700 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000467249 ; C16orf74-005; intron 1

  OTTHUMT00000467251 ; C16orf74-006; exon 2

  OTTHUMT00000467250 ; C16orf74-007; intron 3

  OTTHUMT00000467254 ; C16orf74-003; exon 3

  OTTHUMT00000467252 ; C16orf74-004; exon 4

  OTTHUMT00000467253 ; C16orf74-001; exon 4

  OTTHUMT00000467255 ; C16orf74-002; exon 5

  ENST00000602758 ; C16orf74-005; intron 1

  ENST00000602583 ; C16orf74-006; exon 2

  ENST00000602719 ; C16orf74-007; intron 3

  ENST00000602914 ; C16orf74-003; exon 3

  ENST00000602675 ; C16orf74-004; exon 4

  ENST00000284245 ; C16orf74-001; exon 4

  ENST00000602766 ; C16orf74-002; exon 5

Database links

• EntrezGene:MIR1910
• HGNC:MIR1910
• RNAcentral:URS000075EEF1_9606
• miRBase Tracker:MI0008331

Mature sequence hsa-miR-1910-5p

• Accession: MIMAT0007884
• Sequence: 12 - ccaguccugugccugccgccu - 32
• Deep sequencing: 49 reads, 19 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00004F2EB0_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-1910-5p
  • miRDB:hsa-miR-1910-5p
  • microrna.org:hsa-miR-1910-5p

Mature sequence hsa-miR-1910-3p

• Accession: MIMAT0026917
• Sequence: 51 - gaggcagaagcaggaugaca - 70
• Deep sequencing: 156 reads, 42 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000075A0DB_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-1910-3p
  • miRDB:hsa-miR-1910-3p

References

1. PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2. PMID:23226537 "The repertoire and features of human platelet microRNAs" Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P PLoS One. 7:e50746(2012).