miRBase entry: mdv1-mir-M31

Stem-loop mdv1-mir-M31


Accession
MI0008337
Description
Mareks disease virus type 1 mdv1-mir-M31 precursor miRNA


Sequence

uccuguggccagcucacuggcugugcacugugcgauucuaagUGCUACAGUCGUGAGCAGAUCAAugga
(((..(((.(.((((((.(((((((((((...........))))).)))))))))))).).)))..)))

Structure
   ug   c a      u      -     gugc 
ucc  ugg c gcucac ggcugu gcacu    g
|||  ||| | |||||| |||||| |||||    a
agg  ACU G CGAGUG CUGACA CGUga    u
   uA   A A      -      U     aucu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequences was referred to as miR-M11 in [1], and as miR-M32 in [2]. It is unrelated to the miR-M11 sequence published by Yao et al (MIR:MI0006989) or miR-M32 identified later (MIR:MI0012487).

Genome context
AF243438.1: 5013-5081 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from mdv1-mir-M31
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdv1-miR-M31

Accession MIMAT0007893
Description Mareks disease virus type 1 mdv1-miR-M31 mature miRNA
Sequence 43 - UGCUACAGUCGUGAGCAGAUCAA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18430245
    Deep sequencing of chicken microRNAs
    Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
    BMC Genomics (2008) 9:185

  2. PubMed ID: 18842708
    Sequence conservation and differential expression of Marek's disease virus microRNAs
    "Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J"
    "J Virol (2008) 82:12213-12220