Stem-loop sequence bmo-mir-2a-1

Accession

MI0008338 (change log)

Description

Bombyx mori miR-2a-1 stem-loop

Gene family

MIPF0000049; mir-2

Literature search

11 open access papers mention bmo-mir-2a-1
(80 sentences)

Stem-loop

   g     a  u       -g         c    u  c    gucau 
5'  gcgga ug agucgug  caucaaagu gguu gu auag     a
    ||||| || |||||||  ||||||||| |||| || ||||      
3'  ugucu ac ucagcac  guaguuucg ccga ca uauc     a
   -     -  u       ga         a    -  c    aaugc 

Deep sequencing

2320 reads, 200 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582015.1: 7692561-7692650 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-2a-1

• bmo-mir-2a-1: NW_004582015.1: 7692561-7692650 [-]
• bmo-mir-13a: NW_004582015.1: 7692416-7692494 [-]
• bmo-mir-13b: NW_004582015.1: 7692288-7692367 [-]
• bmo-mir-2a-2: NW_004582015.1: 7692153-7692232 [-]
• bmo-mir-2b: NW_004582015.1: 7692030-7692105 [-]

Database links

• miRBase Tracker:MI0008338

Mature sequence bmo-miR-2a-1-5p

• Accession: MIMAT0015271
• Previous IDs: bmo-miR-2a-1*
• Sequence: 18 - gcaucaaagucgguuugucaua - 39
• Deep sequencing: 664 reads, 3 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00005A01EA_7091

Mature sequence bmo-miR-2a-3p

• Accession: MIMAT0007894
• Previous IDs: bmo-miR-2a
• Sequence: 54 - uaucacagccagcuuugaugagc - 76
• Deep sequencing: 3311 reads, 3 experiments
• Evidence: experimental; Northern [1], RT-PCR [2], Illumina [3]
• Database links:
  • RNAcentral:URS00000B85EA_7091

References

1. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
2. PMID:18977439 "Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system" Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y Insect Biochem Mol Biol. 38:1066-1071(2008).
3. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).