Stem-loop sequence bmo-mir-2a-2

Accession

MI0008339 (change log)

Description

Bombyx mori miR-2a-2 stem-loop

Gene family

MIPF0000049; mir-2

Literature search

11 open access papers mention bmo-mir-2a-2
(79 sentences)

Stem-loop

   aaugu           -     -       c     c   uuu 
5'      uucgucgcuca caaag ugguugu guaug guu   a
        ||||||||||| ||||| ||||||| ||||| |||    
3'      aaguagcgagu guuuc accgaca uauac cgg   c
   -----           a     g       c     -   uuu 

Deep sequencing

1685 reads, 133 reads per million, 3 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582015.1: 7692153-7692232 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-2a-2

• bmo-mir-2a-1: NW_004582015.1: 7692561-7692650 [-]
• bmo-mir-13a: NW_004582015.1: 7692416-7692494 [-]
• bmo-mir-13b: NW_004582015.1: 7692288-7692367 [-]
• bmo-mir-2a-2: NW_004582015.1: 7692153-7692232 [-]
• bmo-mir-2b: NW_004582015.1: 7692030-7692105 [-]

Database links

• miRBase Tracker:MI0008339

Mature sequence bmo-miR-2a-2-5p

• Accession: MIMAT0015272
• Previous IDs: bmo-miR-2a-2*
• Sequence: 13 - cucacaaagugguugucguaug - 34
• Deep sequencing: 30 reads, 3 experiments
• Evidence: experimental; Illumina [3]

Mature sequence bmo-miR-2a-3p

• Accession: MIMAT0007894
• Previous IDs: bmo-miR-2a
• Sequence: 52 - uaucacagccagcuuugaugagc - 74
• Deep sequencing: 3311 reads, 3 experiments
• Evidence: experimental; Northern [1], RT-PCR [2], Illumina [3]
• Database links:
  • RNAcentral:URS00000B85EA_7091

References

1. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
2. PMID:18977439 "Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system" Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y Insect Biochem Mol Biol. 38:1066-1071(2008).
3. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).