miRBase entry: sly-MIR1916

Stem-loop sly-MIR1916


Accession
MI0008351
Description
Solanum lycopersicum sly-MIR1916 precursor miRNA

Literature search
2 open access papers mention sly-MIR1916
(2 sentences)

Sequence

gccuaacuuauuggugaccucuuaaauuuggcacgaaAUUUCACUUAGACACCUCAAguaaagugauguucauuuuagacagcucauguaaggucuuguugugucauuuugauacaacaaaacccuacaugaggugucuaaaaugaacaucgccuacuugaagugccuaagugaaauuucgugucaaguuuaaaggaucaccaaugaauuaggc
((((((.(((((((((((((.(((((((((((((((((((((((((((.(((.(((((((..(((((((((((((((((((.((((((((.(((.(((((((((((...))))))))))).))).)))))))).))))))))))))))))))).))))))).))).)))))))))))))))))))))))))))))).)))))))))).))))))

Structure
      c          -   c                           A   C       aa                   g        a   c           u 
gccuaa uuauugguga ccu uuaaauuuggcacgaaAUUUCACUUAG CAC UCAAgua  gugauguucauuuuagaca cucaugua ggu uuguuguguca  
|||||| |||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||| |||||||| ||| ||||||||||| u
cggauu aguaaccacu gga aauuugaacugugcuuuaaagugaauc gug aguucau  cgcuacaaguaaaaucugu gaguacau cca aacaacauagu  
      a          a   -                           c   a       -c                   g        c   a           u 


Annotation confidence Not enough data
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Genome context
chr8: 57414133-57414346 [+]

Database links

Mature sly-miR1916

Accession MIMAT0007908
Description Solanum lycopersicum sly-miR1916 mature miRNA
Sequence 38 - AUUUCACUUAGACACCUCAA - 57
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609