Stem-loop sly-MIR169c

Accession

MI0008363

Description

Solanum lycopersicum sly-MIR169c precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

17 open access papers mention sly-MIR169c
(48 sentences)

Sequence

gucuagagaguuauuguaugaagagguagggaguggagugCAGCCAAGGAUGACUUGCCGAgauguuguagccuaaugcaaugacauaucggcaggucaucuuuggcuacauuuuauucucuccuauucauguaaaacuuuauagac
(((((.((((((.(((((((((.(((.(((((((((((((.((((((((((((((((((((.(((((((.((.....)).))))))).)))))))))))))))))))).)))))))))))))))).))))))))))))))).)))))

Structure

     g      a         g   u             C                    g       a  c 
gucua agaguu uuguaugaa agg agggaguggagug AGCCAAGGAUGACUUGCCGA auguugu gc u
||||| |||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| || a
cagau uuucaa aauguacuu ucc ucucuuauuuuac ucgguuucuacuggacggcu uacagua cg a
     a      -         a   -             a                    a       a  u 

Annotation confidence Not enough data

Genome context

chr7: 4210774-4210920 [+]

Mature sly-miR169c

• Accession: MIMAT0007920
• Description: Solanum lycopersicum sly-miR169c mature miRNA
• Sequence: 41 - CAGCCAAGGAUGACUUGCCGA - 61
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609