Stem-loop sly-MIR169d

Accession

MI0008364

Description

Solanum lycopersicum sly-MIR169d precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

16 open access papers mention sly-MIR169d
(45 sentences)

Sequence

gaagagggguuuuauaugaaguugagaguauuauuuagUAGCCAAGGAUGACUUGCCUAcuucauuugauauauaguuuaaaauaauaauauugacaauauuugucauuuggucguaggcaaguuauccuggcuaucuugacaugcucguaauuuuucauguaagaccuuaucuuc
(((((.((((((((((((((((((.((((((......(((((((.(((((((((((((((.(((..(((((.(((......((((....)))).....))).)))))..)))..))))))))))))))))))))))......)))))).))))..))))))))))))))..)))))

Structure

     -g              --    a      uauuua       A               -u   uu     u   guuuaa    a 
gaaga  ggguuuuauaugaa  guug gaguau      gUAGCCA GGAUGACUUGCCUAc  uca  ugaua aua      aaua u
|||||  ||||||||||||||  |||| ||||||      ||||||| |||||||||||||||  |||  ||||| |||      ||||  
cuucu  uccagaauguacuu  uaau cucgua      uaucggu ccuauugaacggaug  ggu  acugu uau      uuau a
     au              uu    g      caguuc       -               cu   uu     u   -aacag    a 

Annotation confidence Not enough data

Genome context

chr7: 2171588-2171763 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR169d

Mature sly-miR169d

• Accession: MIMAT0007921
• Description: Solanum lycopersicum sly-miR169d mature miRNA
• Sequence: 39 - UAGCCAAGGAUGACUUGCCUA - 59
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609