miRBase entry: sly-MIR171c

Stem-loop sly-MIR171c


Accession
MI0008367
Description
Solanum lycopersicum sly-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
24 open access papers mention sly-MIR171c
(132 sentences)

Sequence

caaauggaugaauacacgagaUAUUGGUGCGGUUCAAUGAGAaagcaguacuuaagaacauuuuugagucuacuuuuugauugagccgcgccaauaucacguguagcuaaaucuuuaguug
.....((((...((((((.(((((((((((((((((((.((((((.((.((((((((....)))))))))).)))))).))))))))))))))))))).)))))).....)))).......

Structure
--caaau    --gaa      a                   G      c  u        a 
       ggau     uacacg gaUAUUGGUGCGGUUCAAU AGAaag ag acuuaaga c
       ||||     |||||| ||||||||||||||||||| |||||| || ||||||||  
       ucua     augugc cuauaaccgcgccgaguua uuuuuc uc ugaguuuu a
guugauu    aaucg      a                   g      a  -        u 


Annotation confidence Not enough data
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Genome context
chr12: 519779-519899 [-]

Database links

Mature sly-miR171c

Accession MIMAT0007924
Description Solanum lycopersicum sly-miR171c mature miRNA
Sequence 22 - UAUUGGUGCGGUUCAAUGAGA - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609