miRBase entry: ptr-let-7a-1

Stem-loop ptr-let-7a-1


Accession
MI0008397
Description
Pan troglodytes ptr-let-7a-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
5 open access papers mention ptr-let-7a-1
(26 sentences)

Sequence

gggaUGAGGUAGUAGGUUGUAUAGUUuuagggucacacccaccacugggagauaacuauacaaucuacugucuuuccua
((((.(((((((((((((((((((((.....(((...((((....)))).)))))))))))))))))))))))))))).

Structure
-    U                     uuagg   aca    c 
 ggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
 |||| |||||||||||||||||||||     |||   ||||  
 uccu uucugucaucuaacauaucaa     uag   gggu a
a    -                     -----   --a    c 


Annotation confidence Not enough data
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Genome context
chr9: 71912745-71912823 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-let-7a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7a

Accession MIMAT0007936
Description Pan troglodytes ptr-let-7a mature miRNA
Sequence 5 - UGAGGUAGUAGGUUGUAUAGUU - 26
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70