miRBase entry: ptr-let-7a-2

Stem-loop ptr-let-7a-2


Accession
MI0008398
Description
Pan troglodytes ptr-let-7a-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
5 open access papers mention ptr-let-7a-2
(26 sentences)

Sequence

agguUGAGGUAGUAGGUUGUAUAGUUuagaauuacaucaagggagauaacuguacagccuccuagcuuucc
.((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).))).))

Structure
a  uU   G   U             uagaauuac   aa 
 gg  GAG UAG AGGUUGUAUAGUU         auc  g
 ||  ||| ||| |||||||||||||         |||   
 cc  uuc auc uccgacaugucaa         uag  g
-  -u   g   c             ---------   ag 


Annotation confidence Not enough data
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Genome context
chr11: 122642010-122642080 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-let-7a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7a

Accession MIMAT0007936
Description Pan troglodytes ptr-let-7a mature miRNA
Sequence 5 - UGAGGUAGUAGGUUGUAUAGUU - 26
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70