miRBase entry: ptr-let-7a-3

Stem-loop ptr-let-7a-3


Accession
MI0008399
Description
Pan troglodytes ptr-let-7a-3 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
5 open access papers mention ptr-let-7a-3
(26 sentences)

Sequence

ggUGAGGUAGUAGGUUGUAUAGUUuggggcucugcccugcuaugggauaacuauacaaucuacugucuuuccu
((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))).)).

Structure
-  U                     ---------      u 
 gg GAGGUAGUAGGUUGUAUAGUU         uggggc  
 || |||||||||||||||||||||         |||||| c
 cc uucugucaucuaacauaucaa         gucccg  
u  u                     uaggguauc      u 


Annotation confidence Not enough data
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Genome context
chr22: 32894782-32894854 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-let-7a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7a

Accession MIMAT0007936
Description Pan troglodytes ptr-let-7a mature miRNA
Sequence 3 - UGAGGUAGUAGGUUGUAUAGUU - 24
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70