miRBase entry: ptr-let-7b

Stem-loop ptr-let-7b


Accession
MI0008400
Description
Pan troglodytes ptr-let-7b precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
5 open access papers mention ptr-let-7b
(10 sentences)

Sequence

ggggUGAGGUAGUAGGUUGUGUGGUUucagggcagugauguugccccucagaagauaacuauacaaccuacugccuucccug
((((.(((((((((((((((((((((((.((((((.....)))))).......)).))))))))))))))))))))))))).

Structure
-    U                     -  ------a      u 
 gggg GAGGUAGUAGGUUGUGUGGUU uc       gggcag g
 |||| ||||||||||||||||||||| ||       |||||| a
 uccc uuccgucauccaacauaucaa ag       cccguu u
g    -                     u  aagacuc      g 


Annotation confidence Not enough data
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Genome context
chr22: 32895718-32895799 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7b

Accession MIMAT0007937
Description Pan troglodytes ptr-let-7b mature miRNA
Sequence 5 - UGAGGUAGUAGGUUGUGUGGUU - 26
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70