miRBase entry: ptr-let-7c

Stem-loop ptr-let-7c


Accession
MI0008401
Description
Pan troglodytes ptr-let-7c precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
4 open access papers mention ptr-let-7c
(9 sentences)

Sequence

cauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaacuguacaaccuucuagcuuuccuuggagc
..((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))..

Structure
ca      uU   G   U             ua  g ua  c 
  uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
  ||||||  ||| ||| |||||||||||||  || |  || c
  agguuc  uuc auc uccaacaugucaa  uu a  gu  
cg      cu   g   u             --  g gg  c 


Annotation confidence Not enough data
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Genome context
chr21: 2986489-2986571 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-let-7c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7c

Accession MIMAT0007938
Description Pan troglodytes ptr-let-7c mature miRNA
Sequence 10 - UGAGGUAGUAGGUUGUAUGGUU - 31
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70