miRBase entry: ptr-let-7d

Stem-loop ptr-let-7d


Accession
MI0008402
Description
Pan troglodytes ptr-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
4 open access papers mention ptr-let-7d
(9 sentences)

Sequence

cuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagguaacuauacgaccugcugccuuucuuagg
((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))).

Structure
-      A              C      -------uua      g 
 cuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
 |||||| |||||||||||||| ||||||          |||||| a
 gauucu uuccgucguccagc uaucaa          cccguu u
g      -              a      uggaggaaca      u 


Annotation confidence Not enough data
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Genome context
chr9: 71915622-71915707 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7d

Accession MIMAT0007939
Description Pan troglodytes ptr-let-7d mature miRNA
Sequence 7 - AGAGGUAGUAGGUUGCAUAGUU - 28
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70