miRBase entry: ptr-let-7e

Stem-loop ptr-let-7e


Accession
MI0008403
Description
Pan troglodytes ptr-let-7e precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
4 open access papers mention ptr-let-7e
(9 sentences)

Sequence

ccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccaaggagaucacuauacggccuccuagcuuuccccagg
(((((..(((.((((((((((((((((.((((.(....))).......)))))))))))))))))).)))..))).))

Structure
  -   cU   G                U  -------  a g 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg g a
|| |||  ||| |||||||||||||||| ||       || |  
gg ccc  uuc auccuccggcauauca cu       cc c c
  a   cu   g                -  agaggaa  - a 


Annotation confidence Not enough data
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Genome context
chr19: 53915593-53915670 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-let-7e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7e

Accession MIMAT0007940
Description Pan troglodytes ptr-let-7e mature miRNA
Sequence 7 - UGAGGUAGGAGGUUGUAUAGUU - 28
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70