miRBase entry: ptr-let-7f-1

Stem-loop ptr-let-7f-1


Accession
MI0008404
Description
Pan troglodytes ptr-let-7f-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
4 open access papers mention ptr-let-7f-1
(9 sentences)

Sequence

cagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaacuauacaaucuauugccuucccuga
(((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))).

Structure
-   a U                       ---------       u 
 cag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
 ||| | |||||||||||||||||||||||         ||||||| a
 guc c uuccguuaucuaacauaucaaua         ucccauu u
a   - c                       gaggacuug       u 


Annotation confidence Not enough data
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Genome context
chr9: 71913135-71913220 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-let-7f-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7f

Accession MIMAT0007941
Description Pan troglodytes ptr-let-7f mature miRNA
Sequence 6 - UGAGGUAGUAGAUUGUAUAGUU - 27
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70