miRBase entry: ptr-let-7f-2

Stem-loop ptr-let-7f-2


Accession
MI0008405
Description
Pan troglodytes ptr-let-7f-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
4 open access papers mention ptr-let-7f-2
(9 sentences)

Sequence

ugugggaUGAGGUAGUAGAUUGUAUAGUUuuagggucauaccccaucuuggagauaacuauacagucuacugucuuucccac
.((((((.((((((((((((((((((((((((((((........))))))))....))))))))))))))))))))))))))

Structure
u      U                    ----        cau 
 guggga GAGGUAGUAGAUUGUAUAGU    Uuuagggu   a
 |||||| ||||||||||||||||||||    ||||||||    
 cacccu uucugucaucugacauauca    agguucua   c
-      -                    auag        ccc 


Annotation confidence Not enough data
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Genome context
chrX: 53204052-53204133 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-let-7f-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-let-7f

Accession MIMAT0007941
Description Pan troglodytes ptr-let-7f mature miRNA
Sequence 8 - UGAGGUAGUAGAUUGUAUAGUU - 29
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70