miRBase entry: ptr-mir-1179

Stem-loop ptr-mir-1179


Accession
MI0008414
Description
Pan troglodytes ptr-mir-1179 precursor miRNA
Gene family
MIPF0000632; mir-1179


Sequence

gcuggaaaggaagAAGCAUUCUUUCAUUGGUUGGuguguauugccuugucaaccaauaagaggaugccauuuauccuuuucugacuagcu
(((((((((((.((((((((((((.(((((((((...(......)...))))))))).)))))))))..))).)))))).....))))).

Structure
-     -----      a   --         C         ugu ua 
 gcugg     aaagga gAA  GCAUUCUUU AUUGGUUGG   g  u
 |||||     |||||| |||  ||||||||| |||||||||   |   
 cgauc     uuuccu uuu  cguaggaga uaaccaacu   c  u
u     agucu      a   ac         a         guu cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr15: 69333379-69333468 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-1179
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-1179

Accession MIMAT0007948
Description Pan troglodytes ptr-miR-1179 mature miRNA
Sequence 14 - AAGCAUUCUUUCAUUGGUUGG - 34
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70