miRBase entry: ptr-mir-1185-1

Stem-loop ptr-mir-1185-1


Accession
MI0008419
Description
Pan troglodytes ptr-mir-1185-1 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

uugguacuugaagAGAGGAUACCCUUUGUAUGUUcacuugauuaauggcgaauauacagggggagacucuuauuugcguaucaaa
(((((((.(((((((((..(.((((((((((((((.((........)).)))))))))))))))..))))).)))).))))))).

Structure
-       u    -     GA A              a  uga 
 uugguac ugaa gAGAG  U CCCUUUGUAUGUUc cu   u
 ||||||| |||| |||||  | |||||||||||||| ||    
 aacuaug guuu uucuc  a gggggacauauaag gg   u
a       c    a     ag -              c  uaa 


Annotation confidence Not enough data
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Genome context
chr14: 86291220-86291304 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ptr-mir-1185-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-1185

Accession MIMAT0007953
Description Pan troglodytes ptr-miR-1185 mature miRNA
Sequence 14 - AGAGGAUACCCUUUGUAUGUU - 34
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70