miRBase entry: ptr-mir-1197

Stem-loop ptr-mir-1197


Accession
MI0008421
Description
Pan troglodytes ptr-mir-1197 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

cuuccugguauuugaagaugcgguugaccaugguguguacgcuuuauuugugacgUAGGACACAUGGUCUACUUCUucucaauauca
.....(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..)))))))

Structure
cuucc       -u     ugc   u       g   -g    - uuu 
     ugguauu  gaaga   ggu gaccaug ugu  uacg c   a
     |||||||  |||||   ||| ||||||| |||  |||| |   u
     acuauaa  cuUCU   UCA CUGGUAC ACA  AUgc g   u
-----       cu     ---   U       -   GG    a ugu 


Annotation confidence Not enough data
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Genome context
chr14: 86274065-86274151 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ptr-mir-1197
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-1197

Accession MIMAT0007954
Description Pan troglodytes ptr-miR-1197 mature miRNA
Sequence 56 - UAGGACACAUGGUCUACUUCU - 76
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70