Stem-loop sequence ptr-mir-1197

AccessionMI0008421 (change log)
DescriptionPan troglodytes miR-1197 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop
   cuuccu      -u     ugc   u       gug g    - uuu 
5'       gguauu  gaaga   ggu gaccaug   u uacg c   a
         ||||||  |||||   ||| |||||||   | |||| |   u
3'       cuauaa  cuucu   uca cugguac   g augc g   u
   -----a      cu     ---   u       aca g    a ugu 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr14: 86274065-86274151 [+]
sense
ENSPTRT00000068474 ; ptr-mir-1197-201; exon 1
Clustered miRNAs
< 10kb from ptr-mir-1197
ptr-mir-379chr14: 86270569-86270634 [+]
ptr-mir-411chr14: 86271826-86271920 [+]
ptr-mir-299chr14: 86272294-86272362 [+]
ptr-mir-380chr14: 86273518-86273577 [+]
ptr-mir-1197chr14: 86274065-86274151 [+]
ptr-mir-323chr14: 86274233-86274317 [+]
ptr-mir-758chr14: 86274527-86274613 [+]
ptr-mir-329-1chr14: 86275292-86275370 [+]
ptr-mir-329-2chr14: 86275609-86275687 [+]
ptr-mir-494chr14: 86278152-86278231 [+]
ptr-mir-543chr14: 86280507-86280583 [+]
ptr-mir-495chr14: 86282275-86282355 [+]
Database links

Mature sequence ptr-miR-1197

Accession MIMAT0007954
Sequence

56 - 

uaggacacauggucuacuucu

 - 76

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Evidence by similarity; MI0006656
Predicted targets

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).