miRBase entry: ptr-mir-1-2

Stem-loop ptr-mir-1-2


Accession
MI0008422
Description
Pan troglodytes ptr-mir-1-2 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

accuacucagaguacauacuucuuuauguacccauaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuugguagg
.((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).))))))

Structure
a      c                     ac     ug aca 
 ccuacu agaguacauacuucuuuaugu  ccaua  a   u
 |||||| |||||||||||||||||||||  |||||  |    
 ggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
-      u                     -A     cg aac 


Annotation confidence Not enough data
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Genome context
chr18: 18841373-18841456 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-1-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-1

Accession MIMAT0007946
Description Pan troglodytes ptr-miR-1 mature miRNA
Sequence 53 - UGGAAUGUAAAGAAGUAUGUAU - 74
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70