miRBase entry: ptr-mir-1225

Stem-loop ptr-mir-1225


Accession
MI0008432
Description
Pan troglodytes ptr-mir-1225 precursor miRNA
Gene family
MIPF0000445; mir-1225


Sequence

guggguacggcccagugggggggagagggacacgcccugggcucugcccagggugcagccggacugacUGAGCCCCUGUGCCGCCCCCA
.(((((...))))).(((((((((.((((...((((((((((...))))))))))..(((((.....))).)))))).).)).))))))

Structure
guggguacggcccag      -  - g    acacgcccugggcucugcccagggugca  -   a 
               uggggg gg a aggg                            gc cgg c
               |||||| || | ||||                            || ||| u
               ACCCCC CC U UCCC                            CG GUc g
---------------      G  G G    ----------------------------  A   a 


Annotation confidence Not enough data
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Genome context
chr16: 2295772-2295860 [-]

Database links

Mature ptr-miR-1225

Accession MIMAT0007964
Description Pan troglodytes ptr-miR-1225 mature miRNA
Sequence 69 - UGAGCCCCUGUGCCGCCCCCA - 89
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70