miRBase entry: ptr-mir-1234

Stem-loop ptr-mir-1234


Accession
MI0008437
Description
Pan troglodytes ptr-mir-1234 precursor miRNA
Gene family
MIPF0000593; mir-1234


Sequence

gugagugugagguggcuggggggggccggggacggcuugggccugccuagUCGGCCUGACCACCCACCCCACa
(((.((((.(((((((((((.(((.(((((.....))))).))).))))))).)))).).))).)))......

Structure
------   a   - g    -       g   g     g 
      gug gug u aggu ggcuggg ggg ccggg a
      ||| ||| | |||| ||||||| ||| ||||| c
      CAC CAC A UCCG CUgaucc ucc gguuc g
aCACCC   C   C G    G       g   g     g 


Annotation confidence Not enough data
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Genome context
chr8: 147204753-147204825 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-1234
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-1234

Accession MIMAT0007967
Description Pan troglodytes ptr-miR-1234 mature miRNA
Sequence 51 - UCGGCCUGACCACCCACCCCAC - 72
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70