miRBase entry: ptr-mir-1247

Stem-loop ptr-mir-1247


Accession
MI0008453
Description
Pan troglodytes ptr-mir-1247 precursor miRNA
Gene family
MIPF0000669; mir-1247


Sequence

ccgcuugccucgcccagcgcagccccggccgcugggcgcACCCGUCCCGUUCGUCCCCGGAcguugcucucuaccccgggaacgucgagacuggagcgcccgaacugagccaccuucgcggaccccgagagcggc
(((((...((((.((.(((.((....(((((.(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).)))))))...)).)))..)).)))))....))))))))).

Structure
-     ugc    ---c  a   c  cccc   -  --c       A  C   C  UU   C     Ac  ugc 
 ccgcu   cucg    cc gcg ag    ggc cg   ugggcgc CC GUC CG  CGU CCCGG  gu   u
 |||||   ||||    || ||| ||    ||| ||   ||||||| || ||| ||  ||| |||||  ||    
 ggcga   gagc    gg cgc uc    ccg gu   gcccgcg gg cag gc  gca gggcc  ca   c
c     ---    ccca  -   u  --ca   a  caa       a  u   a  -u   a     -c  ucu 


Annotation confidence Not enough data
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Genome context
chr14: 86818833-86818967 [-]

Database links

Mature ptr-miR-1247

Accession MIMAT0007973
Description Pan troglodytes ptr-miR-1247 mature miRNA
Sequence 40 - ACCCGUCCCGUUCGUCCCCGGA - 61
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70