miRBase entry: ptr-mir-1250

Stem-loop ptr-mir-1250


Accession
MI0008456
Description
Pan troglodytes ptr-mir-1250 precursor miRNA
Gene family
MIPF0000696; mir-1250


Sequence

cugucccgcuggccuggcaggugACGGUGCUGGAUGUGGCCUUUuugccuuuucuaaaggccacauuuuccagcccauucaaccuuccagagcccucugaaguggccacagg
((((.((((((((((((.((((((.((.((((((((((((((((...........))))))))))...))))))))..)).)))).)))).)))......)))))..)))).

Structure
-    -c     ------   -    c    -  -C  U      ---          uugc 
 cugu  ccgcu      ggc cugg aggu gA  GG GCUGGA   UGUGGCCUUU    c
 ||||  |||||      ||| |||| |||| ||  || ||||||   ||||||||||    u
 gaca  gguga      ccg gacc ucca cu  cc cgaccu   acaccggaaa    u
g    cc     agucuc   a    u    a  ua  -      uuu          ucuu 


Annotation confidence Not enough data
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Genome context
chr17: 80838132-80838243 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-1250
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-1250

Accession MIMAT0007976
Description Pan troglodytes ptr-miR-1250 mature miRNA
Sequence 24 - ACGGUGCUGGAUGUGGCCUUU - 44
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70