miRBase entry: ptr-mir-1253

Stem-loop ptr-mir-1253


Accession
MI0008458
Description
Pan troglodytes ptr-mir-1253 precursor miRNA
Gene family
MIPF0000611; mir-1253


Sequence

agcagcaagagauagaauccaaaAGAGAAGAAGAUCAGCCUGCAgauguggacugcuaaaugcaggcugaucuucuccccuuugggauucucuuaugagaagcc
.((..((.((((..((((((.((((.(.((((((((((((((((....(((....)))..)))))))))))))))).).)))).)))))))))).))....)).

Structure
a  --ag  a    ua      a    A A                gaug   a 
 gc    ca gaga  gaaucc aaAG G AGAAGAUCAGCCUGCA    ugg c
 ||    || ||||  |||||| |||| | ||||||||||||||||    |||  
 cg    gu uucu  cuuagg uuuc c ucuucuagucggacgu    auc u
c  aaga  a    --      g    c c                --aa   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr17: 2808442-2808545 [-]

Database links

Mature ptr-miR-1253

Accession MIMAT0007978
Description Pan troglodytes ptr-miR-1253 mature miRNA
Sequence 24 - AGAGAAGAAGAUCAGCCUGCA - 44
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70