miRBase entry: ptr-mir-125a

Stem-loop ptr-mir-125a


Accession
MI0008464
Description
Pan troglodytes ptr-mir-125a precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

gccagucucuaggucccugagacccuuuaaccugugaggacauccagggucACAGGUGAGGUUCUUGGGAGCCuggugucuggcc
(((((.(.((((((.(((((((.((((..((((((((((....))....)))))))))))).))))))).)))))).).))))).

Structure
-     u u      c       c    ua        ----  a 
 gccag c cuaggu ccugaga ccuu  accuguga    gg c
 ||||| | |||||| ||||||| ||||  ||||||||    ||  
 cgguc g gguCCG GGGUUCU GGAG  UGGACAcu    cc a
c     u u      A       U    --        ggga  u 


Annotation confidence Not enough data
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Genome context
chr19: 53916062-53916146 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-125a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-125a

Accession MIMAT0007984
Description Pan troglodytes ptr-miR-125a mature miRNA
Sequence 52 - ACAGGUGAGGUUCUUGGGAGCC - 73
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70